PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0033s0132.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 288aa    MW: 31956.1 Da    PI: 7.1407
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0033s0132.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY77.91.1e-24214268159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vk+s +pr    Ct+ gC+vkk+ver +ed ++v++tYeg+H h+
  Kaladp0033s0132.2.p 214 LDDGYKWRKYGQKVVKNSLHPR----CTQMGCRVKKRVERLSEDCRMVITTYEGRHSHP 268
                          59*******************6....********************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.6E-27199270IPR003657WRKY domain
SuperFamilySSF1182905.75E-23206270IPR003657WRKY domain
PROSITE profilePS5081125.545209270IPR003657WRKY domain
SMARTSM007742.3E-30214269IPR003657WRKY domain
PfamPF031066.9E-18215268IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEGGGGGREF VFGSRDDDHQ GSIFSTHPRQ MELHHNNDDF LAASSSSAPA AANNRHVFTL  60
LSHHPNSSST STPATACVAA AGGSTMAMGF INCHNEEEEK DDDQHLFAAH DNRLLNAWKT  120
VYHQQHGLRS TILDPREADG VGNNEEDYHG DDTQTTKNSH SWWRRCPASS SSEKITSKAA  180
SGKISGSSTG VVKMRRKLRE PRFCFQTRTD IDVLDDGYKW RKYGQKVVKN SLHPRCTQMG  240
CRVKKRVERL SEDCRMVITT YEGRHSHPPP PPDDANSSDH DPCFSSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-20205270877Probable WRKY transcription factor 4
2lex_A2e-20205270877Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00618PBMTransfer from AT2G44745Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012473761.16e-53PREDICTED: probable WRKY transcription factor 12 isoform X1
SwissprotQ93WY42e-52WRK12_ARATH; Probable WRKY transcription factor 12
TrEMBLA0A151QW852e-53A0A151QW85_CAJCA; Putative WRKY transcription factor 12
STRINGfgenesh2_kg.4__2664__AT2G44745.12e-50(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.13e-44WRKY family protein